Basic Information
Locus ID:
nbis-gene-51170
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00141.1 | 135628 | 138614 | - | nbis-gene-51170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 16,185.37 Da | 26.16 | 107.59 | 0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 1 | 39 | 1.5E-9 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 48 | 112 | 1.8E-13 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 3 | 158 | 1.22E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 47 | 158 | 1.5E-23 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1 | 46 | 4.6E-13 | IPR036770 |
| SMART | SM00248 | ANK_2a | 85 | 114 | 2.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 129 | 153 | 730.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 47 | 77 | 0.0073 | IPR002110 |
| SMART | SM00248 | ANK_2a | 18 | 44 | 1400.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 47 | 68 | 9.065006 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 85 | 112 | 11.001797 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 47 | 68 | 9.08357 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 85 | 117 | 11.48747 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_006656592.2 | probable E3 ubiquitin-protein ligase XBOS36 [Oryza brachyantha] | 0 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TPX7 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_46564 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology