Basic Information
Locus ID:
nbis-gene-51016
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00139.1 | 78517 | 81171 | + | nbis-gene-51016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 74,508.34 Da | 65.89 | 70.87 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 356 | 678 | 1.3E-74 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 320 | 712 | 6.73E-103 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 314 | 709 | 3.2E-99 | IPR012334 |
| SMART | SM00710 | pbh1 | 539 | 559 | 2300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 582 | 603 | 0.92 | IPR006626 |
| SMART | SM00710 | pbh1 | 516 | 537 | 140.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 466 | 515 | 330.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 611 | 632 | 1700.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 290 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_025818759.1 | polygalacturonase At1g48100-like isoform X1 [Panicum hallii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6MSE9 | Polygalacturonase OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d040725 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology