Basic Information
Locus ID:
nbis-gene-50888
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00138.1 | 9862 | 11785 | - | nbis-gene-50888 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 53,365.07 Da | 60.20 | 73.81 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 420 | 464 | 1.3E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 140 | 182 | 5.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 189 | 3.53E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 421 | 470 | 9.13E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 188 | 7.8E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 383 | 470 | 3.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 140 | 181 | 4.7E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 422 | 463 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 182 | 12.223724 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 422 | 464 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 230 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034584087.1 | RING-H2 finger protein ATL75-like [Setaria viridis] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A1E5UTG6 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022818 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology