halophFGD

Basic Information

Locus ID: nbis-gene-50833

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: transcription factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00137.1	122793	124484	+	nbis-gene-50833

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	40,623.41 Da	50.61	84.41	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal	168	271	4.6E-25	IPR025610
Pfam	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal	31	130	7.4E-14	IPR025610

KEGG Pathway

KO Term:

K13422 (transcription factor MYC2)

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant) ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G17880.1	Basic helix-loop-helix (bHLH) DNA-binding family protein.
RefSeq	XP_012698381.1	LOW QUALITY PROTEIN: transcription factor MYC2-like [Setaria italica]
Swiss-Prot	Q336P5	Transcription factor MYC2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYC2 PE=1 SV=1
TrEMBL	A0A811QM68	Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS41405 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg26945, jg29495, jg37348, jg37408, jg4953
Aizoaceae	Mesembryanthemum crystallinum	5	gene_14879, gene_14880, gene_1605, gene_1728, gene_2111
Amaranthaceae	Atriplex hortensis	4	Ah003986, Ah003987, Ah004273, Ah022794
Amaranthaceae	Beta vulgaris	3	BVRB_1g002400, BVRB_5g104050, BVRB_5g105880
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg24139, Sbi_jg24505, Sbi_jg3854, Sbi_jg49089 ... Sbi_jg7975, Sbi_jg8352
Amaranthaceae	Salicornia europaea	3	Seu_jg11694, Seu_jg12061, Seu_jg6150
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000643, GOSA_00001689, GOSA_00010732
Amaranthaceae	Suaeda glauca	8	Sgl10839, Sgl16193, Sgl51317, Sgl52341, Sgl56690, Sgl57633 ... Sgl63820, Sgl68318
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004877, gene:ENSEOMG00000006810 ... gene:ENSEOMG00000015300, gene:ENSEOMG00000022576, gene:ENSEOMG00000022956, gene:ENSEOMG00000024963, gene:ENSEOMG00000026017, gene:ENSEOMG00000036564, gene:ENSEOMG00000046504
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0003980, CQ.Regalona.r1.2BG0026790 ... CQ.Regalona.r1.5AG0002380, CQ.Regalona.r1.5AG0004890, CQ.Regalona.r1.5AG0004900, CQ.Regalona.r1.5BG0002550, CQ.Regalona.r1.5BG0005280, CQ.Regalona.r1.5BG0005290
Anacardiaceae	Pistacia vera	2	pistato.v30006370, pistato.v30133340
Apiaceae	Apium graveolens	6	Ag11G03856, Ag5G01278, Ag6G00790, Ag6G01532, AgUnG00471 ... AgUnG00473
Arecaceae	Cocos nucifera	8	COCNU_07G003710, COCNU_07G007610, COCNU_08G008340 ... COCNU_09G003690, COCNU_10G002520, COCNU_10G005790, scaffold002848G000030, scaffold019947G000030
Arecaceae	Phoenix dactylifera	8	gene-LOC103699800, gene-LOC103704709, gene-LOC103706364 ... gene-LOC103711767, gene-LOC103714042, gene-LOC103716907, gene-LOC103721582, gene-LOC120104403
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1658.V1.1
Asteraceae	Flaveria trinervia	7	Ftri13G01355, Ftri14G16593, Ftri14G19656, Ftri15G06271 ... Ftri16G25944, Ftri3G16256, Ftri3G31050
Brassicaceae	Arabidopsis thaliana	5	AT1G32640.1, AT4G00870.1, AT4G17880.1, AT5G46760.1 ... AT5G46830.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10000808m.g.v1.0, Thhalv10000853m.g.v1.0 ... Thhalv10007075m.g.v1.0, Thhalv10024688m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g28280.v2.2, Sp2g11570.v2.2, Sp2g11630.v2.2 ... Sp7g16240.v2.2, SpUn0036_0040.v2.2
Brassicaceae	Brassica nigra	9	BniB02g063410.2N, BniB02g063470.2N, BniB03g016310.2N ... BniB03g035750.2N, BniB04g015470.2N, BniB04g015480.2N, BniB04g015560.2N, BniB04g049150.2N, BniB05g018490.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G0341, Ceq03G0649, Ceq04G1277
Casuarinaceae	Casuarina glauca	3	Cgl01G0344, Cgl03G0741, Cgl04G1437
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g05080, gene.Cymno18g05700
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g07070, gene.Thate05g11720, gene.Thate07g02230 ... gene.Thate09g04890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-11371, nbisL1-mrna-11624, nbisL1-mrna-1523 ... nbisL1-mrna-2864, nbisL1-mrna-6175
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.637, evm.TU.LG05.769, evm.TU.LG10.1612
Plantaginaceae	Plantago ovata	2	Pov_00002988, Pov_00010120
Plumbaginaceae	Limonium bicolor	2	Lb3G20359, Lb4G25366
Poaceae	Echinochloa crus-galli	1	BH01.3129
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0117910, gene-QOZ80_2BG0171500
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0053170.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_012868
Poaceae	Oryza coarctata	2	Oco19G010950, Oco20G010780
Poaceae	Oryza sativa	1	LOC_Os10g42430.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G275700
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0503378
Poaceae	Sporobolus alterniflorus	5	Chr06G026990, Chr09G005980, Chr13G018900, Chr15G018080 ... Chr16G006410
Poaceae	Thinopyrum elongatum	1	Tel1E01G336100
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG029280, gene_TRIDC1BG034740
Poaceae	Triticum aestivum	3	TraesCS1A02G193200.1, TraesCS1B02G208000.1.cds1 ... TraesCS1D02G196900.1.cds1
Poaceae	Zea mays	2	Zm00001eb024330_P001, Zm00001eb390330_P002
Poaceae	Zoysia japonica	4	nbis-gene-38139, nbis-gene-39267, nbis-gene-39268 ... nbis-gene-50833
Poaceae	Zoysia macrostachya	2	Zma_g12982, Zma_g15749
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.2103, evm.TU.LG04.3043, evm.TU.LG06.212 ... evm.TU.LG10.719, evm.TU.LG16.563, evm.TU.LG17.727, evm.TU.LG18.554
Posidoniaceae	Posidonia oceanica	10	gene.Posoc02g11860, gene.Posoc02g11870, gene.Posoc02g11880 ... gene.Posoc02g11890, gene.Posoc02g11900, gene.Posoc06g06230, gene.Posoc06g06240, gene.Posoc07g00580, gene.Posoc09g00200, gene.Posoc09g11880
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.524, evm.TU.Scaffold_16_RagTag.31 ... evm.TU.Scaffold_16_RagTag.481, evm.TU.Scaffold_5_RagTag.666, evm.TU.Scaffold_9_RagTag.640
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10687, nbisL1-mrna-17829, nbisL1-mrna-21579 ... nbisL1-mrna-22228, nbisL1-mrna-22279, nbisL1-mrna-22751
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-12452, nbisL1-mrna-17724, nbisL1-mrna-19166 ... nbisL1-mrna-19334, nbisL1-mrna-7563
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-11310, nbisL1-mrna-20447, nbisL1-mrna-22120 ... nbisL1-mrna-7438, nbisL1-mrna-8224
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.56, add.evm.TU.utg000006l.253 ... add.evm.TU.utg000007l.46, add.evm.TU.utg000022l.125, add.evm.TU.utg000022l.263
Rhizophoraceae	Kandelia obovata	4	Maker00013833, Maker00014502, Maker00017793, Maker00018698
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17390, nbisL1-mrna-18061, nbisL1-mrna-18196 ... nbisL1-mrna-20777, nbisL1-mrna-23320
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10588, nbisL1-mrna-5401, nbisL1-mrna-6414 ... nbisL1-mrna-6813, nbisL1-mrna-7306
Salicaceae	Populus euphratica	7	populus_peu03170, populus_peu03180, populus_peu03765 ... populus_peu27509, populus_peu31499, populus_peu34033, populus_peu34609
Solanaceae	Lycium barbarum	9	gene-LOC132608789, gene-LOC132609732, gene-LOC132612332 ... gene-LOC132612333, gene-LOC132629441, gene-LOC132632127, gene-LOC132635286, gene-LOC132638036, gene-LOC132645386
Solanaceae	Solanum chilense	6	SOLCI002550900, SOLCI004214400, SOLCI004352900 ... SOLCI004353300, SOLCI005417600, SOLCI006410300
Solanaceae	Solanum pennellii	6	gene-LOC107027416, gene-LOC107027900, gene-LOC107028709 ... gene-LOC107028843, gene-LOC107032486, gene-LOC107032494
Tamaricaceae	Reaumuria soongarica	4	STRG.16171_chr06_+, STRG.23740_chr05_+, gene_15183 ... gene_15185
Tamaricaceae	Tamarix chinensis	3	TC01G2850, TC09G0463, TC09G2388
Zosteraceae	Zostera marina	7	Zosma02g02890.v3.1, Zosma03g22170.v3.1, Zosma05g01080.v3.1 ... Zosma05g10360.v3.1, Zosma05g19450.v3.1, Zosma05g25300.v3.1, Zosma06g01420.v3.1