Basic Information
Locus ID:
nbis-gene-50675
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00134.1 | 543482 | 548743 | + | nbis-gene-50675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 39,749.39 Da | 55.06 | 92.85 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 140 | 179 | 1.29831E-17 | - |
| Pfam | PF12906 | RING-variant domain | 140 | 177 | 2.0E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 180 | 1.06E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 194 | 7.8E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 139 | 181 | 4.2E-12 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 132 | 200 | 17.453371 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 92 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_002466564.1 | uncharacterized protein LOC8060005 [Sorghum bicolor] | 0 |
| TrEMBL | A0A1E5VMK8 | RING-CH-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology