Basic Information
Locus ID:
nbis-gene-50539
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
CDPK6
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00133.1 | 170286 | 174072 | + | nbis-gene-50539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 41,354.51 Da | 45.87 | 70.94 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 288 | 349 | 2.93382E-18 | IPR002048 |
| Pfam | PF13202 | EF hand | 259 | 273 | 0.12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 287 | 349 | 2.8E-15 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 66 | 222 | 3.2E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 65 | 222 | 4.86E-48 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 252 | 349 | 6.91E-29 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 222 | 350 | 1.4E-33 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 68 | 152 | 5.3E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 153 | 221 | 4.2E-18 | - |
| SMART | SM00054 | efh_1 | 323 | 351 | 6.5E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 252 | 280 | 0.039 | IPR002048 |
| SMART | SM00054 | efh_1 | 288 | 316 | 4.9E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 66 | 296 | 8.2E-30 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 248 | 283 | 10.803317 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 284 | 319 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 320 | 354 | 12.895472 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 66 | 363 | 28.244692 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 297 | 309 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 72 | 95 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 332 | 344 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 261 | 273 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 186 | 198 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 44 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23650.1 | calcium-dependent protein kinase 6. Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. | 0 |
| RefSeq | XP_047094616.1 | calcium-dependent protein kinase 15 isoform X2 [Lolium rigidum] | 0 |
| Q6I587 | Calcium-dependent protein kinase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3IAN3 | Calcium-dependent protein kinase 3 OS=Corchorus capsularis OX=210143 GN=CCACVL1_13526 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag6G00904 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50539 |