Basic Information
Locus ID:
nbis-gene-50417
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00132.1 | 143955 | 147364 | - | nbis-gene-50417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 78,499.48 Da | 37.85 | 75.09 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 50 | 338 | 1.86666E-66 | - |
| CDD | cd10316 | RGL4_M | 381 | 482 | 3.65551E-29 | IPR029413 |
| CDD | cd10317 | RGL4_C | 494 | 708 | 5.21952E-46 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 492 | 707 | 2.2E-44 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 41 | 242 | 4.9E-67 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 408 | 478 | 4.1E-20 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 490 | 708 | 5.1E-34 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 426 | 480 | 1.71E-7 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 51 | 306 | 6.59E-5 | IPR011013 |
| Gene3D | G3DSA:2.60.120.260 | - | 488 | 708 | 9.3E-12 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 45 | 333 | 3.5E-12 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 378 | 480 | 3.0E-7 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.4 | - | 0 |
| RefSeq | XP_004960971.1 | probable rhamnogalacturonate lyase B [Setaria italica] | 0 |
| TrEMBL | A0A5J9SJ75 | rhamnogalacturonan endolyase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55661 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology