Basic Information
Locus ID:
nbis-gene-50347
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00131.1 | 371090 | 377859 | + | nbis-gene-50347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 41,387.65 Da | 53.34 | 80.38 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.77464E-21 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 160 | 209 | 1.34705E-30 | - |
| Pfam | PF09280 | XPC-binding domain | 291 | 322 | 9.9E-9 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 204 | 9.6E-15 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.0E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 350 | 385 | 1.1E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 334 | 391 | 1.23E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 2.3E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 162 | 220 | 1.88E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 289 | 326 | 7.98E-9 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 284 | 324 | 5.4E-9 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 342 | 388 | 7.5E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 159 | 209 | 3.6E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.2E-24 | - |
| SMART | SM00165 | uba_6 | 350 | 387 | 6.4E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 166 | 206 | 1.3E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 393 | 4.6E-91 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 164 | 207 | 12.980641 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.954695 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 347 | 388 | 14.016817 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 344 | 360 | 6.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 361 | 375 | 6.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 294 | 316 | 6.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 376 | 391 | 6.7E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 251 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052159049.1 | ubiquitin receptor RAD23d-like isoform X1 [Oryza glaberrima] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TJY4 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_45328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology