Basic Information
Locus ID:
nbis-gene-50030
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00128.1 | 224029 | 226638 | + | nbis-gene-50030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 60,271.85 Da | 47.89 | 80.96 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 30 | 135 | 5.91072E-15 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 182 | 300 | 6.2E-17 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 171 | 301 | 2.32E-20 | IPR011333 |
| SUPERFAMILY | SSF57783 | Zinc beta-ribbon | 468 | 508 | 6.38E-13 | - |
| SUPERFAMILY | SSF57783 | Zinc beta-ribbon | 512 | 549 | 2.68E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 28 | 141 | 1.01E-17 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 139 | 1.8E-8 | IPR008974 |
| Gene3D | G3DSA:2.20.25.10 | - | 464 | 506 | 2.7E-18 | - |
| Gene3D | G3DSA:6.10.250.3030 | - | 297 | 350 | 3.5E-12 | - |
| Gene3D | G3DSA:2.20.25.10 | - | 507 | 550 | 2.8E-13 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 168 | 296 | 4.9E-26 | IPR011333 |
| SMART | SM00225 | BTB_4 | 192 | 302 | 2.7E-13 | IPR000210 |
| SMART | SM00661 | rpol9cneu | 471 | 518 | 8.1E-9 | IPR001529 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 13 | 134 | 8.73125 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 192 | 267 | 13.797939 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 386 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16265.2 | - | 0 |
| RefSeq | XP_002443354.2 | BTB/POZ and MATH domain-containing protein 3 [Sorghum bicolor] | 0 |
| Q6NLH0 | DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=3702 GN=NRPB9A PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5WKR4 | BTB/POZ and MATH domain-containing protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0000984 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0442140 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065528, gene-QYE76_065564 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G103900, gene-BS78_08G104000 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50030 |