Basic Information
Locus ID:
nbis-gene-49948
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00127.1 | 353441 | 354709 | - | nbis-gene-49948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 47,540.62 Da | 53.57 | 85.00 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 41 | 2.3E-8 | IPR001810 |
| Pfam | PF07734 | F-box associated | 231 | 360 | 6.0E-11 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 40 | 1.83E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 42 | 4.3E-8 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 7.9E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 123 | 347 | 7.3E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 10.742706 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_015630188.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC107276268 [Oryza sativa Japonica Group] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6T2P2 | F-box domain-containing protein (Fragment) OS=Setaria viridis OX=4556 GN=SEVIR_9G392700v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH01.3850, BH04.2111, CH01.4111, CH01.4112 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2BG0182310, gene-QOZ80_2BG0182320 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_018469, gene-QYE76_067676, gene-QYE76_067677 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G014270, Oco06G011750, Oco06G012020, Oco06G012030 ... |
| Poaceae | Oryza sativa | 8 | LOC_Os03g25190.1, LOC_Os03g25220.1, LOC_Os03g25240.1 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G485500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2B02G217900.1.cds1, TraesCS4A02G013900.1.cds1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11989, nbis-gene-47249, nbis-gene-49948 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1101, Zma_g3492, Zma_g3565 |