Basic Information
Locus ID:
nbis-gene-49529
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00122.1 | 100854 | 111332 | - | nbis-gene-49529 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 48,095.65 Da | 46.35 | 79.09 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 297 | 0.045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 319 | 5.5E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 358 | 8.0E-54 | IPR015943 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 297 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 27 | 67 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 118 | 9.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 85 | 127 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 299 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 253 | 9.03805 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 421 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_051190986.1 | uncharacterized protein LOC127304336 [Lolium perenne] | 0 |
| Q10G81 | Histone-binding protein MSI1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453LGS6 | CAF1C_H4-bd domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbis-gene-49529.