Basic Information
Locus ID:
nbis-gene-49136
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00118.1 | 89369 | 91578 | + | nbis-gene-49136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 56,572.51 Da | 41.49 | 77.91 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 442 | 489 | 8.1E-7 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 48 | 4.84E-6 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 432 | 491 | 2.44E-11 | IPR035979 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 54 | 5.3E-5 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 415 | 507 | 2.0E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 441 | 504 | 1.2E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 440 | 507 | 11.639343 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50250.1 | chloroplast RNA-binding protein 31B. Encodes a RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Supports editing of specific CP31A-dependent sites. | 0 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 0 |
| P19683 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9US16 | RRM domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_28919 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology