Basic Information
Locus ID:
nbis-gene-48940
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00115.1 | 788512 | 794476 | - | nbis-gene-48940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 42,558.61 Da | 58.53 | 69.85 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 113 | 140 | 8.0E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 148 | 1.25E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 145 | 1.8E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 117 | 140 | 9.804232 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 275 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32361.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL1F precursor. | 0 |
| RefSeq | XP_039810715.1 | E3 ubiquitin-protein ligase ATL41-like [Panicum virgatum] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UBS9 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_30833 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1452, BH02.1524 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014460 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0233030.1.CDS1 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G009280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g20910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G134700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G021900, Chr08G007690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G156100, Tel6E01G148600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG010650, gene_TRIDC3BG014430 |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G087900.1.cds1, TraesCS3B02G103300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb130410_P001, Zm00001eb340160_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48940, nbis-gene-6548 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10213, Zma_g7881 |