Basic Information
Locus ID:
nbis-gene-48873
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00115.1 | 291705 | 293752 | + | nbis-gene-48873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 30,548.75 Da | 68.31 | 55.98 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 54 | 95 | 1.41573E-24 | - |
| Pfam | PF13639 | Ring finger domain | 53 | 95 | 2.2E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 123 | 220 | 5.3E-40 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 101 | 3.31E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 101 | 7.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 54 | 94 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 95 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 44 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_004960533.1 | E3 ubiquitin-protein ligase RDUF2-like [Setaria italica] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U3U4 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_34423 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology