Basic Information
Locus ID:
nbis-gene-48677
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00113.1 | 492489 | 500041 | - | nbis-gene-48677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 76,234.12 Da | 54.65 | 60.16 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15517 | PHD_TCF19_like | 140 | 193 | 1.60739E-9 | - |
| Pfam | PF00628 | PHD-finger | 139 | 194 | 1.8E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 2 | 57 | 1.59E-5 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 46 | 107 | 2.66E-11 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 137 | 196 | 3.7E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 196 | 1.4E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 55 | 6.1E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 103 | 2.6E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 139 | 194 | 7.8E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1 | 55 | 9.8E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 56 | 102 | 4.7E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 137 | 196 | 9.045 | IPR019787 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 2 | 55 | 9.140347 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1 | 57 | 9.5879 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 2 | 54 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 127 | 193 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 579 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08020.1 | PHD finger family protein. | 0 |
| RefSeq | XP_025805875.1 | uncharacterized protein LOC112884637 isoform X1 [Panicum hallii] | 0 |
| Q8BRH4 | Histone-lysine N-methyltransferase 2C OS=Mus musculus OX=10090 GN=Kmt2c PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WRP1 | PHD-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_01349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26669, jg29032, jg29837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14563 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035709 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g029230 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21753, Sbi_jg22066, Sbi_jg32577, Sbi_jg9771 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15992 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008614, GOSA_00024010 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63009, Sgl67636 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019312, gene:ENSEOMG00000019759 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017040, CQ.Regalona.r1.2BG0018830 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30230180 |
| Apiaceae | Apium graveolens | 1 | Ag1G00292 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G004410, COCNU_14G012220, scaffold000148G000040 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703699, gene-LOC103715735, gene-LOC120103723 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.947.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G05000, Ftri11G23128 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G08020.1, AT3G52100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010234m.g.v1.0, Thhalv10020119m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g06930.v2.2, Sp5g10200.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g074330.2N, BniB07g058740.2N, BniB08g066360.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0456 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0489 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04780 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06470 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.73 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030905 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13289, Lb2G13296 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3623, BH05.3644, CH05.3822 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0392440, gene-QOZ80_5BG0440750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0447180.1 |
| Poaceae | Oryza coarctata | 2 | Oco23G007590, Oco24G007160 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g34330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G084100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703691 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G016160, Chr06G016860, Chr19G009940, Chr27G006490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G190500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG014380, gene_TRIDC5BG017340 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G099800.1, TraesCS5B02G105000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb137800_P001, Zm00001eb410840_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30221, nbis-gene-48677 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25133, Zma_g25906 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG07.910, evm.TU.LG15.1744, evm.TU.LG15.818 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g09820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1413 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9228 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-465 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15249 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.177 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002845 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9518 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18782 |
| Salicaceae | Populus euphratica | 4 | populus_peu01877, populus_peu01878, populus_peu35939 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644717 |
| Solanaceae | Solanum chilense | 4 | SOLCI000377600, SOLCI000897300, SOLCI000897700 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107007829, gene-LOC107008120, gene-LOC107008407 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11736, gene_6989 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0050, TC05G1285 |
| Zosteraceae | Zostera marina | 1 | Zosma03g05390.v3.1 |