Basic Information
Locus ID:
nbis-gene-48563
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00112.1 | 454515 | 457529 | - | nbis-gene-48563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 51,338.36 Da | 43.71 | 75.59 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 90 | 128 | 2.6E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 195 | 290 | 2.35E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 77 | 139 | 1.96E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 86 | 146 | 7.0E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 165 | 306 | 2.3E-9 | IPR032675 |
| SMART | SM00256 | fbox_2 | 93 | 132 | 8.8E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 87 | 123 | 9.312009 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 348 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78760.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021320387.1 | putative F-box protein At1g58310 isoform X2 [Sorghum bicolor] | 0 |
| Q9ZV94 | Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana OX=3702 GN=At1g78760 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5J9W4E3 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_09676 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology