Basic Information
Locus ID:
nbis-gene-48521
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00112.1 | 178530 | 187747 | + | nbis-gene-48521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 113,519.70 Da | 46.84 | 77.58 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 290 | 644 | 2.88257E-70 | - |
| CDD | cd16449 | RING-HC | 760 | 797 | 7.25921E-12 | - |
| CDD | cd18793 | SF2_C_SNF | 878 | 983 | 7.26823E-48 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 872 | 973 | 5.4E-13 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 760 | 796 | 3.9E-5 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 302 | 721 | 5.9E-67 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 755 | 804 | 4.16E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 278 | 644 | 3.5E-46 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 652 | 1030 | 1.87E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 260 | 349 | 2.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 401 | 502 | 2.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 659 | 1031 | 4.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 753 | 843 | 7.8E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 508 | 656 | 1.5E-30 | IPR038718 |
| SMART | SM00490 | helicmild6 | 890 | 973 | 2.1E-16 | IPR001650 |
| SMART | SM00184 | ring_2 | 760 | 798 | 3.1E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 286 | 621 | 3.7E-30 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 403 | 606 | 12.829134 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 866 | 1026 | 12.953815 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 760 | 799 | 11.07299 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 775 | 784 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 80 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W4K6 | Helicase-like transcription factor CHR28 OS=Eragrostis curvula OX=38414 GN=EJB05_09494 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology