Basic Information
Locus ID:
nbis-gene-48506
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00112.1 | 88270 | 89763 | - | nbis-gene-48506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.32 | 54,721.27 Da | 66.28 | 82.07 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 448 | 488 | 1.57366E-7 | - |
| Pfam | PF13639 | Ring finger domain | 447 | 488 | 3.7E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 439 | 493 | 4.29E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 432 | 496 | 1.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 448 | 487 | 0.0048 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 448 | 488 | 10.689412 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 181 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035819143.1 | uncharacterized protein LOC103642511 [Zea mays] | 0 |
| TrEMBL | A0A5J9W516 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_09457 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology