Basic Information
Locus ID:
nbis-gene-48487
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00111.1 | 835063 | 835938 | + | nbis-gene-48487 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 32,725.10 Da | 43.86 | 91.79 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 16 | 205 | 1.6E-35 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 9 | 222 | 3.54E-41 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 166 | 6.1E-35 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 125 | 139 | 5.5E-12 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 69 | 84 | 5.5E-12 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 191 | 208 | 5.5E-12 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 16 | 29 | 5.5E-12 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 156 | 176 | 5.5E-12 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044432913.1 | protein synthesis inhibitor II-like [Triticum aestivum] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7EEH8 | rRNA N-glycosylase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G291500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology