Basic Information
Locus ID:
nbis-gene-48381
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00111.1 | 89464 | 92814 | + | nbis-gene-48381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 45,990.43 Da | 64.75 | 62.42 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 349 | 392 | 1.92056E-15 | - |
| Pfam | PF13639 | Ring finger domain | 349 | 392 | 3.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 349 | 402 | 5.98E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 397 | 3.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 350 | 391 | 2.2E-4 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 346 | 399 | 0.0068 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 350 | 392 | 11.191014 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 340 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_004962332.1 | RING-H2 finger protein ATL39 [Setaria italica] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7EEZ1 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G304100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology