Basic Information
Locus ID:
nbis-gene-48090
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00108.1 | 641790 | 645944 | + | nbis-gene-48090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 27,626.65 Da | 55.59 | 77.65 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 152 | 209 | 2.3E-20 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 153 | 209 | 2.82E-21 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 79 | 213 | 1.8E-22 | IPR016135 |
| SMART | SM00212 | ubc_7 | 77 | 249 | 5.4E-4 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 83 | 251 | 16.580101 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 184 | 200 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 251 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.2 | - | 0 |
| RefSeq | XP_035816662.1 | ubiquitin-conjugating enzyme family isoform X2 [Zea mays] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | B6SIN0 | Ubiquitin-conjugating enzyme E2 4 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d032830 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology