Basic Information
Locus ID:
nbis-gene-47901
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00107.1 | 444942 | 448613 | + | nbis-gene-47901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 28,322.95 Da | 46.30 | 69.15 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 19 | 251 | 2.6E-83 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 134 | 241 | 4.45E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 136 | 254 | 8.9E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 140 | 242 | 24.528 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 91 | - | - |
| Coils | Coil | Coil | 79 | 102 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.1 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_002438435.1 | auxin-responsive protein IAA21 isoform X1 [Sorghum bicolor] | 0 |
| Q5Z749 | Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TCF0 | Auxin-responsive protein OS=Eragrostis curvula OX=38414 GN=EJB05_42440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology