Basic Information
Locus ID:
nbis-gene-47615
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00106.1 | 116510 | 121589 | + | nbis-gene-47615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.01 | 56,925.86 Da | 65.84 | 72.05 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 453 | 496 | 1.62029E-15 | - |
| Pfam | PF13639 | Ring finger domain | 453 | 496 | 3.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 449 | 502 | 1.21E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 426 | 501 | 1.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 454 | 495 | 1.0E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 453 | 496 | 1.1E-4 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 454 | 496 | 13.197422 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 111 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_040382839.1 | probable E3 ubiquitin-protein ligase XERICO [Oryza brachyantha] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T2I0 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology