Basic Information
Locus ID:
nbis-gene-47548
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
HMT3
Description:
betaine-homocysteine S-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00105.1 | 743940 | 749755 | - | nbis-gene-47548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 19,030.97 Da | 23.84 | 80.97 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 97 | 163 | 1.7E-14 | IPR003726 |
| Pfam | PF02574 | Homocysteine S-methyltransferase | 1 | 90 | 3.5E-17 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 2 | 165 | 2.83E-35 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 94 | 175 | 3.1E-19 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 1 | 93 | 5.6E-24 | IPR036589 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 1 | 176 | 14.396291 | IPR003726 |
| Coils | Coil | Coil | 170 | 176 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.2 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_025805597.1 | homocysteine S-methyltransferase 3 [Panicum hallii] | 0 |
| Q9FUM8 | Homocysteine S-methyltransferase 3 OS=Zea mays OX=4577 GN=HMT-3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835A7Y4 | Hcy-binding domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_061097 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology