Basic Information
Locus ID:
nbis-gene-47334
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00104.1 | 558652 | 564346 | + | nbis-gene-47334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 85,368.81 Da | 70.68 | 57.56 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 339 | 475 | 1.39503E-38 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 396 | 466 | 2.8E-20 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 299 | 388 | 8.7E-25 | IPR011545 |
| Pfam | PF00397 | WW domain | 58 | 88 | 3.2E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 49 | 89 | 3.81E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 300 | 482 | 9.07E-44 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 50 | 98 | 1.2E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 411 | 486 | 6.2E-12 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 283 | 407 | 1.6E-39 | IPR027417 |
| SMART | SM00487 | ultradead3 | 204 | 417 | 1.9E-15 | IPR014001 |
| SMART | SM00490 | helicmild6 | 387 | 466 | 1.3E-20 | IPR001650 |
| SMART | SM00456 | ww_5 | 57 | 90 | 7.0E-5 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 56 | 90 | 11.0929 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 299 | 400 | 17.846479 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 361 | 505 | 19.093414 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 62 | 88 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 346 | 354 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 625 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021311702.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Sorghum bicolor] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VDI3 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_15931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology