Basic Information
Locus ID:
nbis-gene-4723
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00003.1 | 6384589 | 6388167 | - | nbis-gene-4723 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 17,064.46 Da | 21.21 | 89.53 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 4 | 92 | 2.9E-23 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 98 | 7.86E-30 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 84 | 5.7E-38 | - |
| SMART | SM00220 | serkin_6 | 4 | 149 | 1.9E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 149 | 16.866821 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 33 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
map04115 (p53 signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48750.1 | cell division control 2. A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase. | 0 |
| RefSeq | XP_047251314.1 | cell division control protein 2 homolog A isoform X3 [Capsicum annuum] | 0 |
| P23111 | Cell division control protein 2 homolog OS=Zea mays OX=4577 GN=CDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6F4W4 | Cyclin-dependent kinase 1 OS=Zea mays OX=4577 GN=cdk1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4548 |
| Apiaceae | Apium graveolens | 1 | Ag3G01694 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G282300 |
| Poaceae | Triticum aestivum | 1 | TraesCS3A02G080000.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4723 |