HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: nbis-gene-47065
Species & Taxonomic ID: Zoysia japonica & 309978
Genome Assembly: GCA_040438285.1
Description: K-box region
Maps and Mapping Data
Chromosome Start End Strand ID
Zjn_sc00102.1 694871 707423 - nbis-gene-47065
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.69 16,687.06 Da 38.95 96.22 -0.39
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF01486 K-box region 40 103 1.0E-15 IPR002487
Gene Ontology
Biological Process:
GO:0006355 (regulation of DNA-templated transcription)
Molecular Function:
GO:0003700 (DNA-binding transcription factor activity)
Cellular Component:
GO:0005634 (nucleus)
KEGG Pathway
KO Term:
K09260 (MADS-box transcription enhancer factor 2A)
Pathway:
ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_034575080.1 MADS-box transcription factor 56-like isoform X2 [Setaria viridis] 0
Swiss-Prot A2Z9Q7 MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 0
TrEMBL A0A0C4MKI0 MADS-box protein OS=Zoysia matrella OX=38722 GN=SS8 PE=2 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 12 jg10149, jg13374, jg14048, jg18452, jg1862, jg2350, jg29292 ...
jg34008, jg37180, jg4859, jg7583, jg7584
Aizoaceae Mesembryanthemum crystallinum 2 gene_1379, gene_14801
Amaranthaceae Atriplex hortensis 2 Ah003718, Ah023110
Amaranthaceae Beta vulgaris 1 BVRB_5g101250
Amaranthaceae Salicornia bigelovii 3 Sbi_jg23664, Sbi_jg49303, Sbi_jg7513
Amaranthaceae Salicornia europaea 2 Seu_jg12523, Seu_jg5810
Amaranthaceae Suaeda aralocaspica 2 GOSA_00000344, GOSA_00001294
Amaranthaceae Suaeda glauca 4 Sgl11207, Sgl16602, Sgl51869, Sgl57167
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000006308, gene:ENSEOMG00000014504 ...
gene:ENSEOMG00000020221, gene:ENSEOMG00000027535, gene:ENSEOMG00000034051, gene:ENSEOMG00000047148
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0005650, CQ.Regalona.r1.2BG0024000 ...
CQ.Regalona.r1.5AG0008500, CQ.Regalona.r1.5BG0008750
Anacardiaceae Pistacia vera 2 pistato.v30003470, pistato.v30011980
Apiaceae Apium graveolens 6 Ag10G00252, Ag11G03893, Ag5G02767, Ag6G01639, Ag9G00532 ...
Ag9G02402
Arecaceae Cocos nucifera 7 COCNU_07G007820, COCNU_07G007840, COCNU_08G007880 ...
COCNU_08G007890, COCNU_09G003370, COCNU_10G006160, COCNU_15G004990
Arecaceae Phoenix dactylifera 5 gene-LOC103696089, gene-LOC103697443, gene-LOC103702697 ...
gene-LOC103706417, gene-LOC103710691
Asparagaceae Asparagus officinalis 2 AsparagusV1_04.2369.V1.1, AsparagusV1_08.192.V1.1
Asteraceae Flaveria trinervia 6 Ftri11G23769, Ftri15G21911, Ftri18G13582, Ftri3G09306 ...
Ftri5G00137, Ftri9G28338
Brassicaceae Arabidopsis thaliana 6 AT2G45660.1, AT4G11880.1, AT4G22950.1, AT5G51860.1 ...
AT5G51870.3, AT5G62165.1
Brassicaceae Eutrema salsugineum 7 Thhalv10001632m.g.v1.0, Thhalv10004954m.g.v1.0 ...
Thhalv10014716m.g.v1.0, Thhalv10015303m.g.v1.0, Thhalv10026205m.g.v1.0, Thhalv10027077m.g.v1.0, Thhalv10028949m.g.v1.0
Brassicaceae Schrenkiella parvula 8 Sp2g25340.v2.2, Sp4g27700.v2.2, Sp6g05600.v2.2 ...
Sp6g14110.v2.2, Sp6g14120.v2.2, Sp6g14130.v2.2, Sp7g21040.v2.2, Sp7g23460.v2.2
Brassicaceae Brassica nigra 16 BniB01g001370.2N, BniB02g029370.2N, BniB02g075810.2N ...
BniB02g080150.2N, BniB02g081860.2N, BniB03g012800.2N, BniB03g021460.2N, BniB04g002420.2N, BniB04g002690.2N, BniB05g011830.2N, BniB05g014200.2N, BniB06g004060.2N, BniB06g010470.2N, BniB08g029500.2N, BniB08g029770.2N, BniB08g049570.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq01G2026, Ceq03G0484
Casuarinaceae Casuarina glauca 3 Cgl01G2200, Cgl02G2131, Cgl03G0593
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno04g03110
Dunaliellaceae Dunaliella salina 1 Dusal.0260s00006.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate02g03720, gene.Thate08g07680
Malvaceae Hibiscus hamabo Siebold & Zucc. 3 nbisL1-mrna-11257, nbisL1-mrna-1588, nbisL1-mrna-6116
Nitrariaceae Nitraria sibirica 6 evm.TU.LG01.2227, evm.TU.LG01.2228, evm.TU.LG01.2229 ...
evm.TU.LG01.2230, evm.TU.LG04.978, evm.TU.LG10.1320
Plantaginaceae Plantago ovata 4 Pov_00016808, Pov_00029041, Pov_00032202, Pov_00033562
Plumbaginaceae Limonium bicolor 4 Lb1G04390, Lb1G04391, Lb1G04439, Lb2G10497
Poaceae Echinochloa crus-galli 8 AH01.3086, AH01.5123, AH07.168, BH01.3428, BH01.5088 ...
BH01.5259, BH07.33, CH01.3674
Poaceae Eleusine coracana subsp. coracana 6 gene-QOZ80_2AG0098670, gene-QOZ80_2AG0115010 ...
gene-QOZ80_2BG0152160, gene-QOZ80_2BG0168790, gene-QOZ80_3AG0231610, gene-QOZ80_3BG0296260
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.1HG0054220.1, HORVU.MOREX.r3.1HG0054230.1 ...
HORVU.MOREX.r3.4HG0412460.1, HORVU.MOREX.r3.6HG0540820.1
Poaceae Lolium multiflorum 5 gene-QYE76_012332, gene-QYE76_017633, gene-QYE76_019242 ...
gene-QYE76_019257, gene-QYE76_071315
Poaceae Oryza coarctata 8 Oco03G000240, Oco04G000240, Oco05G001340, Oco06G001300 ...
Oco11G000450, Oco12G000350, Oco19G008950, Oco20G008820
Poaceae Oryza sativa 4 LOC_Os02g01355.1, LOC_Os03g03070.1, LOC_Os06g01890.1 ...
LOC_Os10g39130.1
Poaceae Paspalum vaginatum 3 gene-BS78_01G302600, gene-BS78_01G500700 ...
gene-BS78_04G004400
Poaceae Puccinellia tenuiflora 7 Pt_Chr0100628, Pt_Chr0100645, Pt_Chr0200696, Pt_Chr0204710 ...
Pt_Chr0503074, Pt_Chr0705413, Pt_Ctg00161
Poaceae Sporobolus alterniflorus 9 Chr01G038570, Chr04G005950, Chr06G028760, Chr06G036350 ...
Chr07G005660, Chr09G003640, Chr12G000820, Chr13G021300, Chr15G020020
Poaceae Thinopyrum elongatum 8 Tel1E01G344500, Tel1E01G344800, Tel4E01G568600 ...
Tel4E01G568700, Tel4E01G586900, Tel6E01G040900, Tel6E01G042600, Tel6E01G047500
Poaceae Triticum dicoccoides 6 gene_TRIDC1AG030260, gene_TRIDC1AG030270 ...
gene_TRIDC1BG035770, gene_TRIDC4BG058350, gene_TRIDC5AG073470, gene_TRIDC6AG001250
Poaceae Triticum aestivum 12 TraesCS1A02G199600.2, TraesCS1A02G199900.1 ...
TraesCS1B02G214500.1, TraesCS1B02G214600.1.cds1, TraesCS1D02G203300.2, TraesCS1D02G203400.1, TraesCS4B02G346700.1, TraesCS4D02G341700.1, TraesCS5A02G515500.1, TraesCS6A02G011700.1, TraesCS6B02G017900.1, TraesCS6D02G014600.1
Poaceae Zea mays 3 Zm00001eb001670_P005, Zm00001eb393670_P002 ...
Zm00001eb403750_P001
Poaceae Zoysia japonica 6 nbis-gene-3104, nbis-gene-36177, nbis-gene-36179 ...
nbis-gene-4697, nbis-gene-47065, nbis-gene-52305
Poaceae Zoysia macrostachya 5 Zma_g12810, Zma_g14800, Zma_g15593, Zma_g2204, Zma_g4551
Portulacaceae Portulaca oleracea 7 evm.TU.LG01.2786, evm.TU.LG04.2364, evm.TU.LG04.3456 ...
evm.TU.LG10.274, evm.TU.LG16.130, evm.TU.LG17.268, evm.TU.LG19.1201
Posidoniaceae Posidonia oceanica 1 gene.Posoc07g07470
Rhizophoraceae Bruguiera sexangula 6 evm.TU.Scaffold_11_RagTag.1315, evm.TU.Scaffold_4_RagTag.346 ...
evm.TU.Scaffold_14_RagTag.255, evm.TU.Scaffold_16_RagTag.241, evm.TU.Scaffold_5_RagTag.341, evm.TU.Scaffold_9_RagTag.385
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-10913, nbisL1-mrna-18127, nbisL1-mrna-22484 ...
nbisL1-mrna-29024
Rhizophoraceae Ceriops tagal 5 nbisL1-mrna-10074, nbisL1-mrna-15726, nbisL1-mrna-1606 ...
nbisL1-mrna-18560, nbisL1-mrna-7439
Rhizophoraceae Ceriops zippeliana 5 nbisL1-mrna-12892, nbisL1-mrna-1960, nbisL1-mrna-20272 ...
nbisL1-mrna-7119, nbisL1-mrna-8458
Rhizophoraceae Kandelia candel 6 evm.TU.utg000003l.308, evm.TU.utg000006l.530 ...
evm.TU.utg000007l.216, evm.TU.utg000008l.222, evm.TU.utg000010l.336, evm.TU.utg000022l.348
Rhizophoraceae Kandelia obovata 6 Maker00000686, Maker00008916, Maker00009412, Maker00013628 ...
Maker00014303, Maker00018317
Rhizophoraceae Rhizophora apiculata 9 nbisL1-mrna-16087, nbisL1-mrna-19490, nbisL1-mrna-19491 ...
nbisL1-mrna-19492, nbisL1-mrna-22672, nbisL1-mrna-3489, nbisL1-mrna-6875, nbisL1-mrna-6876, nbisL1-mrna-9239
Rhizophoraceae Rhizophora mangle 11 nbisL1-mrna-10828, nbisL1-mrna-12717, nbisL1-mrna-12718 ...
nbisL1-mrna-12719, nbisL1-mrna-12721, nbisL1-mrna-12722, nbisL1-mrna-12723, nbisL1-mrna-12724, nbisL1-mrna-20643, nbisL1-mrna-6633, nbisL1-mrna-6973
Salicaceae Populus euphratica 7 populus_peu03482, populus_peu27801, populus_peu28876 ...
populus_peu30275, populus_peu30566, populus_peu31740, populus_peu34322
Solanaceae Lycium barbarum 9 gene-LOC132603858, gene-LOC132631808, gene-LOC132633009 ...
gene-LOC132634991, gene-LOC132639068, gene-LOC132645637, gene-LOC132645638, gene-LOC132645639, gene-LOC132645640
Solanaceae Solanum chilense 6 SOLCI002559400, SOLCI002559500, SOLCI004080500 ...
SOLCI004571300, SOLCI004797500, SOLCI007115800
Solanaceae Solanum pennellii 7 gene-LOC107001949, gene-LOC107006635, gene-LOC107009850 ...
gene-LOC107009862, gene-LOC107013793, gene-LOC107021365, gene-LOC107027318
Tamaricaceae Reaumuria soongarica 6 STRG.29203_chr11_+, gene_11143, gene_14129, gene_15148 ...
gene_485, gene_5190
Tamaricaceae Tamarix chinensis 1 TC03G2728
Zosteraceae Zostera marina 3 Zosma01g41420.v3.1, Zosma02g06390.v3.1, Zosma02g24860.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.