Basic Information
Locus ID:
nbis-gene-46876
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00101.1 | 405776 | 406807 | + | nbis-gene-46876 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 36,709.58 Da | 46.72 | 57.26 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 178 | 230 | 6.33E-5 | IPR011011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 87 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024316079.1 | uncharacterized protein LOC112271186 [Brachypodium distachyon] | 0 |
| TrEMBL | A0A1D6J305 | Extra-large GTP-binding protein 3 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d024948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8409 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064330 |
| Apiaceae | Apium graveolens | 1 | Ag7G00129 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.532.V1.1, AsparagusV1_07.534.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G12854 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2449 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.553 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036744 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.15, BH09.75, CH09.54 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0617090, gene-QOZ80_8BG0644650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0331110.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco02G032570 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g74620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G001900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr26G000640 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G602600.1.cds1, TraesCS3D02G542200.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb419060_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46876 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19197 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.412 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1892 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19676 |
| Salicaceae | Populus euphratica | 2 | populus_peu14536, populus_peu17017 |