Basic Information
Locus ID:
nbis-gene-46844
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00101.1 | 208314 | 210552 | - | nbis-gene-46844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 56,306.41 Da | 56.07 | 78.01 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 254 | 303 | 1.85506E-14 | - |
| Pfam | PF12906 | RING-variant domain | 254 | 302 | 7.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 306 | 9.08E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 310 | 4.4E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 253 | 303 | 9.2E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 246 | 309 | 18.887821 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039771355.1 | uncharacterized protein LOC120639561 isoform X6 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9T613 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_46879 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology