Basic Information
Locus ID:
nbis-gene-46764
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00100.1 | 675892 | 678553 | + | nbis-gene-46764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 30,154.48 Da | 44.36 | 87.65 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 175 | 214 | 2.67345E-15 | - |
| Pfam | PF17123 | RING-like zinc finger | 175 | 203 | 2.1E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 215 | 1.63E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 221 | 3.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 213 | 2.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 213 | 9.715714 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004978363.1 | E3 ubiquitin-protein ligase RNF181 [Setaria italica] | 0 |
| Q5XIL0 | E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RBA5 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G14750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 1 | nbis-gene-46764 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16032, Zma_g24709 |