halophFGD

Basic Information

Locus ID: nbis-gene-46402

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: FBD

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00097.1	1134577	1135711	-	nbis-gene-46402

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.18	35,181.07 Da	65.48	87.88	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	89	121	2.2E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	88	130	6.28E-9	IPR036047
Gene3D	G3DSA:3.40.50.980	-	198	271	3.1E-6	-
ProSiteProfiles	PS50181	F-box domain profile.	87	139	8.543671	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G20510.3	-	0
RefSeq	XP_044376895.1	4-coumarate--CoA ligase-like 4 [Triticum aestivum]	0
Swiss-Prot	Q10S72	4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL4 PE=2 SV=1	0
TrEMBL	A0A0A9N8F1	4-coumarate--CoA ligase OS=Arundo donax OX=35708 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Zoysia japonica	5	nbis-gene-27847, nbis-gene-29453, nbis-gene-46402 ... nbis-gene-47950, nbis-gene-54812
Poaceae	Zoysia macrostachya	1	Zma_g25471