HalophFGD

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Basic Information
Locus ID: nbis-gene-46114
Species & Taxonomic ID: Zoysia japonica & 309978
Genome Assembly: GCA_040438285.1
Description: WD40 repeats
Maps and Mapping Data
Chromosome Start End Strand ID
Zjn_sc00096.1 817630 821608 + nbis-gene-46114
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
4.86 27,592.71 Da 40.80 76.45 -0.23
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 168 238 2.4E-4 IPR024977
SUPERFAMILY SSF101898 NHL repeat 99 234 7.06E-14 -
Gene3D G3DSA:2.130.10.10 - 13 253 4.1E-29 IPR015943
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K14003 (prolactin regulatory element-binding protein)
Pathway:
ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G01470.1 SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. 0
RefSeq XP_039777725.1 SEC12-like protein 2 [Panicum virgatum] 0
Swiss-Prot Q39221 SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 0
TrEMBL A0A5J9V368 ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21951 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg14511, jg7330
Aizoaceae Mesembryanthemum crystallinum 2 gene_23132, gene_604
Amaranthaceae Atriplex hortensis 4 Ah012450, Ah012451, Ah016321, Ah023382
Amaranthaceae Salicornia bigelovii 4 Sbi_jg29069, Sbi_jg3290, Sbi_jg40588, Sbi_jg50615
Amaranthaceae Salicornia europaea 2 Seu_jg2171, Seu_jg6645
Amaranthaceae Suaeda aralocaspica 2 GOSA_00000104, GOSA_00016038
Amaranthaceae Suaeda glauca 9 Sgl11480, Sgl13206, Sgl16880, Sgl18419, Sgl33801, Sgl34290 ...
Sgl39692, Sgl45088, Sgl49856
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000010681, gene:ENSEOMG00000013497 ...
gene:ENSEOMG00000033031, gene:ENSEOMG00000034857, gene:ENSEOMG00000047014, gene:ENSEOMG00000049291
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0008180, CQ.Regalona.r1.2BG0021230 ...
CQ.Regalona.r1.8AG0009650, CQ.Regalona.r1.8BG0010650
Anacardiaceae Pistacia vera 3 pistato.v30170310, pistato.v30205970, pistato.v30217290
Apiaceae Apium graveolens 3 Ag11G04559, Ag1G01641, Ag6G00567
Arecaceae Cocos nucifera 3 COCNU_03G007440, COCNU_06G013280, scaffold004036G000010
Arecaceae Phoenix dactylifera 5 gene-LOC103701794, gene-LOC103710165, gene-LOC103710997 ...
gene-LOC103712026, gene-LOC120111993
Asparagaceae Asparagus officinalis 2 AsparagusV1_01.1665.V1.1, AsparagusV1_03.1984.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G03945, Ftri17G03727
Brassicaceae Arabidopsis thaliana 4 AT2G01470.1, AT3G52190.1, AT5G50550.1, AT5G50650.1
Brassicaceae Eutrema salsugineum 2 Thhalv10000916m.g.v1.0, Thhalv10010438m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp2g12920.v2.2, Sp5g10080.v2.2
Brassicaceae Brassica nigra 6 BniB02g021150.2N, BniB02g064740.2N, BniB04g009690.2N ...
BniB06g033220.2N, BniB06g066630.2N, BniB08g066470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G0893
Casuarinaceae Casuarina glauca 2 Cgl05G1173, Cgl09G0965
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno01g02000, gene.Cymno16g04280
Dunaliellaceae Dunaliella salina 1 Dusal.1031s00004.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate02g41720, gene.Thate04g20540
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-6792
Nitrariaceae Nitraria sibirica 3 evm.TU.LG02.1159, evm.TU.LG03.1371, evm.TU.LG11.410
Plantaginaceae Plantago ovata 2 Pov_00010686, Pov_00019071
Plumbaginaceae Limonium bicolor 4 Lb1G05334, Lb2G12329, Lb3G21233, Lb3G21235
Poaceae Echinochloa crus-galli 10 AH01.237, AH03.460, AH04.1949, AH08.2314, BH01.499, BH03.562 ...
BH04.1965, CH01.362, CH03.642, CH04.2316
Poaceae Eleusine coracana subsp. coracana 6 gene-QOZ80_3AG0212220, gene-QOZ80_3BG0257430 ...
gene-QOZ80_7AG0558790, gene-QOZ80_7BG0589990, gene-QOZ80_9AG0688770, gene-QOZ80_9BG0716380
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.4HG0365400.1, HORVU.MOREX.r3.5HG0520330.1 ...
HORVU.MOREX.r3.5HG0520500.1, HORVU.MOREX.r3.7HG0733200.1
Poaceae Lolium multiflorum 5 gene-QYE76_016826, gene-QYE76_042088, gene-QYE76_042897 ...
gene-QYE76_061149, gene-QYE76_066049
Poaceae Oryza coarctata 4 Oco13G002930, Oco14G003210, Oco21G008420, Oco22G009650
Poaceae Oryza sativa 3 LOC_Os03g58570.1, LOC_Os07g09000.1, LOC_Os11g39650.1
Poaceae Paspalum vaginatum 3 gene-BS78_01G048600, gene-BS78_02G062100 ...
gene-BS78_05G207900
Poaceae Puccinellia tenuiflora 6 Pt_Chr0105428, Pt_Chr0105507, Pt_Chr0105508, Pt_Chr0107634 ...
Pt_Chr0303750, Pt_Chr0704448
Poaceae Sporobolus alterniflorus 8 Chr01G002610, Chr07G015190, Chr12G034460, Chr16G004780 ...
Chr17G004270, Chr19G016900, Chr28G002260, Chr31G007620
Poaceae Thinopyrum elongatum 4 Tel4E01G241400, Tel5E01G699000, Tel7E01G766000 ...
Tel7E01G788800
Poaceae Triticum dicoccoides 8 gene_TRIDC4AG025750, gene_TRIDC4BG025860 ...
gene_TRIDC5AG063980, gene_TRIDC5BG068630, gene_TRIDC7AG063020, gene_TRIDC7AG065110, gene_TRIDC7BG056610, gene_TRIDC7BG058620
Poaceae Triticum aestivum 12 TraesCS4A02G163600.1, TraesCS4B02G166000.1 ...
TraesCS4D02G152300.1, TraesCS5A02G446800.1, TraesCS5B02G450700.1, TraesCS5D02G453600.2, TraesCS7A02G454100.1, TraesCS7A02G466100.1, TraesCS7B02G354500.1, TraesCS7B02G367500.1, TraesCS7D02G443200.1, TraesCS7D02G453800.2
Poaceae Zea mays 6 Zm00001eb061140_P001, Zm00001eb115120_P003 ...
Zm00001eb166990_P002, Zm00001eb228390_P001, Zm00001eb302280_P001, Zm00001eb411370_P001
Poaceae Zoysia japonica 4 nbis-gene-15373, nbis-gene-26765, nbis-gene-43138 ...
nbis-gene-46114
Poaceae Zoysia macrostachya 4 Zma_g18187, Zma_g19051, Zma_g271, Zma_g6120
Portulacaceae Portulaca oleracea 4 evm.TU.LG01.825, evm.TU.LG19.497, evm.TU.LG23.183 ...
evm.TU.LG24.589
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g22540, gene.Posoc03g03950
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.815, evm.TU.Scaffold_4_RagTag.1557
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-23527, nbisL1-mrna-26184, nbisL1-mrna-26411
Rhizophoraceae Ceriops tagal 3 nbisL1-mrna-16834, nbisL1-mrna-20934, nbisL1-mrna-4092
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-17513, nbisL1-mrna-22026, nbisL1-mrna-4383
Rhizophoraceae Kandelia candel 3 evm.TU.utg000001l.120, evm.TU.utg000008l.846 ...
evm.TU.utg000013l.457
Rhizophoraceae Kandelia obovata 3 Maker00001200, Maker00004317, Maker00004640
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-10850, nbisL1-mrna-11606, nbisL1-mrna-2206
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-14225, nbisL1-mrna-2749, nbisL1-mrna-9608
Salicaceae Populus euphratica 4 populus_peu06176, populus_peu07169, populus_peu20019 ...
populus_peu21162
Solanaceae Lycium barbarum 4 gene-LOC132614281, gene-LOC132614546, gene-LOC132618634 ...
gene-LOC132640612
Solanaceae Solanum chilense 2 SOLCI001406800, SOLCI002649400
Solanaceae Solanum pennellii 2 gene-LOC107003056, gene-LOC107024030
Tamaricaceae Reaumuria soongarica 3 STRG.19713_chr07_+, STRG.32413_chr09_-, gene_17278
Tamaricaceae Tamarix chinensis 2 TC02G1067, TC04G1282
Zosteraceae Zostera marina 4 Zosma04g11130.v3.1, Zosma05g15150.v3.1, Zosma05g32500.v3.1 ...
Zosma06g23600.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.