Basic Information
Locus ID:
nbis-gene-46100
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00096.1 | 747941 | 752721 | + | nbis-gene-46100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 49,036.39 Da | 42.10 | 69.78 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 75 | 156 | 2.81732E-32 | - |
| CDD | cd12354 | RRM3_TIA1_like | 288 | 362 | 1.63821E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 170 | 244 | 1.85489E-47 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 290 | 356 | 4.6E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 171 | 241 | 1.5E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 135 | 1.8E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 280 | 367 | 1.49E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 71 | 248 | 1.77E-42 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 168 | 247 | 1.4E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 167 | 2.3E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 248 | 368 | 1.7E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 170 | 243 | 5.2E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 74 | 139 | 7.4E-12 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 289 | 358 | 2.7E-19 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 289 | 358 | 0.62 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 170 | 243 | 0.16 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 169 | 247 | 18.018063 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 158 | 14.982202 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 288 | 362 | 16.704798 | IPR000504 |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_039822338.1 | oligouridylate-binding protein 1-like [Panicum virgatum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology