Basic Information
Locus ID:
nbis-gene-45945
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00096.1 | 28973 | 30857 | + | nbis-gene-45945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 23,432.18 Da | 55.28 | 77.37 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00570 | HRDC domain | 111 | 173 | 1.6E-6 | IPR002121 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 106 | 179 | 8.3E-13 | IPR044876 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 104 | 184 | 12.074242 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 76 | - | - |
| Coils | Coil | Coil | 107 | 127 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.2 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | NP_001168975.1 | uncharacterized protein LOC100382802 [Zea mays] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D6KC75 | Mediator of RNA polymerase II transcription subunit 34 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d030366 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology