Basic Information
Locus ID:
nbis-gene-45921
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00095.1 | 1015883 | 1027586 | - | nbis-gene-45921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 33,491.36 Da | 64.73 | 97.86 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 251 | 295 | 4.90887E-21 | - |
| Pfam | PF13639 | Ring finger domain | 251 | 293 | 4.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 242 | 299 | 1.03E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 238 | 302 | 3.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 252 | 292 | 2.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 252 | 293 | 11.943417 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11680.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_039806826.1 | E3 ubiquitin-protein ligase At1g12760-like isoform X2 [Panicum virgatum] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VUY5 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_12810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology