Basic Information
Locus ID:
nbis-gene-45656
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00094.1 | 121192 | 130196 | + | nbis-gene-45656 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 108,831.78 Da | 35.18 | 82.52 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 317 | 1.80245E-178 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 818 | 8.5E-43 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 875 | 958 | 7.3E-5 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 353 | 7.0E-93 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 9.8E-20 | IPR015341 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 355 | 2.5E-107 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 358 | 456 | 6.87E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 461 | 961 | 3.92E-124 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1180 | - | 478 | 602 | 6.6E-28 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 399 | 1.3E-29 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 603 | 866 | 4.8E-93 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 321 | 1.6E-119 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 400 | 456 | 7.6E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 867 | 965 | 6.8E-20 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 4.4E-21 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_034568306.1 | probable alpha-mannosidase At5g13980 isoform X1 [Setaria viridis] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6TFC2 | Alpha-mannosidase OS=Setaria viridis OX=4556 GN=SEVIR_8G146100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology