Basic Information
Locus ID:
nbis-gene-45531
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00093.1 | 524636 | 530948 | + | nbis-gene-45531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 37,095.11 Da | 49.82 | 84.87 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.50076E-20 | - |
| Pfam | PF00627 | UBA/TS-N domain | 307 | 342 | 2.1E-9 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 143 | 181 | 8.2E-15 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 248 | 280 | 1.5E-8 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.2E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 139 | 184 | 5.11E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 288 | 349 | 4.44E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 246 | 284 | 2.09E-9 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 4.14E-20 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.1E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 299 | 346 | 1.7E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 136 | 186 | 7.2E-19 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 240 | 281 | 2.5E-9 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.8E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 307 | 344 | 8.7E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 143 | 183 | 6.1E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 350 | 1.0E-83 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 141 | 184 | 12.763767 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.671614 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 304 | 345 | 14.185496 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 301 | 317 | 7.6E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 318 | 332 | 7.6E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 348 | 7.6E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 251 | 273 | 7.6E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 126 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052159050.1 | ubiquitin receptor RAD23d-like isoform X2 [Oryza glaberrima] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TJY4 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_45328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology