Basic Information
Locus ID:
nbis-gene-45470
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00093.1 | 137158 | 145697 | + | nbis-gene-45470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 55,204.84 Da | 51.38 | 85.02 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 340 | 381 | 7.03508E-22 | - |
| Pfam | PF04564 | U-box domain | 336 | 407 | 1.8E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 411 | 8.39E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 411 | 1.5E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 339 | 402 | 4.2E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 335 | 409 | 33.571198 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_004965131.1 | U-box domain-containing protein 21 [Setaria italica] | 0 |
| Q9FXA4 | U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1 | 0 | |
| TrEMBL | J3MCX7 | U-box domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0445320 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG031950 |
| Poaceae | Triticum aestivum | 1 | TraesCS7A02G104500.1.cds1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45470 |