halophFGD

Basic Information

Locus ID: nbis-gene-44950

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: Glycosyl hydrolases family 18

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00090.1	832106	834263	+	nbis-gene-44950

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.69	35,650.96 Da	35.62	90.64	0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00704	Glycosyl hydrolases family 18	128	314	3.5E-26	IPR001223
SUPERFAMILY	SSF51445	(Trans)glycosidases	36	318	4.01E-26	IPR017853
SUPERFAMILY	SSF54556	Chitinase insertion domain	208	285	1.83E-12	IPR029070
Gene3D	G3DSA:3.20.20.80	Glycosidases	143	341	2.2E-15	-
Gene3D	G3DSA:3.10.50.10	-	211	285	2.0E-11	IPR029070
Gene3D	G3DSA:3.20.20.80	Glycosidases	32	142	4.4E-11	-
SMART	SM00636	2g34	35	314	3.3E-19	IPR011583
ProSiteProfiles	PS51910	Glycosyl hydrolases family 18 (GH18) domain profile.	127	331	14.824988	IPR001223

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0008061 (chitin binding)

KEGG Pathway

KO Term:

K01183 (chitinase [EC:3.2.1.14])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01206 (Chitin + H2O <=> N-Acetyl-D-glucosamine + Chitin) R02334 (Chitin + H2O <=> Chitobiose + Chitin)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain.
RefSeq	XP_025825878.1	class V chitinase-like [Panicum hallii]
Swiss-Prot	A0A1B1J8Z2	Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2
TrEMBL	A0A5J9TR83	GH18 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37293 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg31570, jg31571, jg33012, jg3953, jg3954, jg3955, jg5966
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10561, gene_10562, gene_11464, gene_11465
Amaranthaceae	Atriplex hortensis	2	Ah014680, Ah014681
Amaranthaceae	Beta vulgaris	3	BVRB_6g137090, BVRB_8g197730, BVRB_8g197740
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25904, Sbi_jg9749
Amaranthaceae	Salicornia europaea	1	Seu_jg18932
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007703, GOSA_00009651, GOSA_00009652
Amaranthaceae	Suaeda glauca	10	Sgl03951, Sgl41831, Sgl42333, Sgl42371, Sgl46631, Sgl47111 ... Sgl61588, Sgl61589, Sgl63997, Sgl68477
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000010159, gene:ENSEOMG00000010529 ... gene:ENSEOMG00000012310, gene:ENSEOMG00000031717, gene:ENSEOMG00000034494, gene:ENSEOMG00000044178, gene:ENSEOMG00000045063, gene:ENSEOMG00000045283, gene:ENSEOMG00000045564, gene:ENSEOMG00000045865, gene:ENSEOMG00000046600
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.8AG0019080, CQ.Regalona.r1.8AG0019090 ... CQ.Regalona.r1.8AG0019100, CQ.Regalona.r1.8BG0023300, CQ.Regalona.r1.8BG0023310, CQ.Regalona.r1.8BG0023320
Anacardiaceae	Pistacia vera	5	pistato.v30179330, pistato.v30179340, pistato.v30250740 ... pistato.v30266070, pistato.v30266080
Apiaceae	Apium graveolens	4	Ag3G01366, Ag3G01367, Ag3G01368, Ag3G01369
Arecaceae	Cocos nucifera	3	COCNU_01G005410, COCNU_01G005420, COCNU_02G014700
Arecaceae	Phoenix dactylifera	8	gene-LOC103697692, gene-LOC103699142, gene-LOC103699734 ... gene-LOC103722003, gene-LOC103724254, gene-LOC120107852, gene-LOC120107853, gene-LOC120107855
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3359.V1.1, AsparagusV1_09.1203.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G08896, Ftri15G09246, Ftri15G22617, Ftri16G13925 ... Ftri3G12564
Brassicaceae	Arabidopsis thaliana	9	AT4G19720.1, AT4G19730.1, AT4G19740.1, AT4G19750.1 ... AT4G19760.1, AT4G19770.1, AT4G19800.1, AT4G19810.1, AT4G19820.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10025464m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g18320.v2.2
Brassicaceae	Brassica nigra	5	BniB03g022990.2N, BniB03g049020.2N, BniB05g016670.2N ... BniB06g015670.2N, BniB08g040230.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G2515, Ceq03G2519, Ceq03G2522, Ceq03G2523, Ceq04G2441
Casuarinaceae	Casuarina glauca	10	Cgl03G2652, Cgl03G2653, Cgl03G2654, Cgl03G2655, Cgl03G2657 ... Cgl03G2658, Cgl03G2659, Cgl03G2663, Cgl03G2664, Cgl04G2667
Dunaliellaceae	Dunaliella salina	1	Dusal.0815s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g21780
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.1507
Plantaginaceae	Plantago ovata	3	Pov_00000933, Pov_00000934, Pov_00015564
Plumbaginaceae	Limonium bicolor	11	Lb1G00603, Lb1G01080, Lb1G01764, Lb2G10684, Lb5G28462 ... Lb5G28465, Lb5G28467, Lb5G28468, Lb5G28471, Lb5G28472, Lb5G28622
Poaceae	Echinochloa crus-galli	8	AH04.1219, AH08.640, AH09.727, BH04.1170, BH08.57, BH09.744 ... CH04.1368, CH09.794
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0321150, gene-QOZ80_4BG0356740 ... gene-QOZ80_9AG0681120
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0161040.1
Poaceae	Lolium multiflorum	1	gene-QYE76_043475
Poaceae	Oryza coarctata	3	Oco07G003600, Oco08G003780, Oco22G006320
Poaceae	Oryza sativa	2	LOC_Os04g30770.1, LOC_Os11g27400.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G170700, gene-BS78_06G060100
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0303081
Poaceae	Sporobolus alterniflorus	2	Chr16G007490, Chr25G013020
Poaceae	Thinopyrum elongatum	1	Tel2E01G500600
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG040390, gene_TRIDC2BG043390
Poaceae	Triticum aestivum	3	TraesCS2A02G279100.1, TraesCS2B02G296600.1 ... TraesCS2D02G278100.1
Poaceae	Zea mays	2	Zm00001eb169950_P002, Zm00001eb420850_P001
Poaceae	Zoysia japonica	3	nbis-gene-38635, nbis-gene-44950, nbis-gene-59271
Poaceae	Zoysia macrostachya	2	Zma_g18789, Zma_g19530
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.1098, evm.TU.LG04.1099, evm.TU.LG04.1100 ... evm.TU.LG04.1102, evm.TU.LG05.1644, evm.TU.LG05.1645, evm.TU.LG05.1646, evm.TU.LG05.1647, evm.TU.LG26.381
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g04180
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.51077.2, evm.TU.Scaffold_10_RagTag.146 ... evm.TU.Scaffold_10_RagTag.148, evm.TU.Scaffold_4_RagTag.2204, evm.TU.Scaffold_4_RagTag.2208, evm.TU.Scaffold_4_RagTag.2244
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-13934, nbisL1-mrna-25267, nbisL1-mrna-25272 ... nbisL1-mrna-25274, nbisL1-mrna-25275, nbisL1-mrna-25277, nbisL1-mrna-25406, nbisL1-mrna-25573, nbisL1-mrna-25575
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13175, nbisL1-mrna-13177, nbisL1-mrna-21265
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16581, nbisL1-mrna-4955, nbisL1-mrna-4961
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.478, add.evm.TU.utg000023l.95 ... add.evm.TU.utg000023l.96, evm.TU.utg000008l.1297, evm.TU.utg000033l.92
Rhizophoraceae	Kandelia obovata	4	Maker00000657, Maker00000761, Maker00014825, Maker00018952
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16677, nbisL1-mrna-17475, nbisL1-mrna-1886 ... nbisL1-mrna-22571
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-14537, nbisL1-mrna-22247, nbisL1-mrna-24717 ... nbisL1-mrna-24718, nbisL1-mrna-24720, nbisL1-mrna-24722, nbisL1-mrna-7819, nbisL1-mrna-9181, nbisL1-mrna-9182, nbisL1-mrna-9184, nbisL1-mrna-9187
Salicaceae	Populus euphratica	8	populus_peu05629, populus_peu05632, populus_peu12262 ... populus_peu12263, populus_peu12270, populus_peu12271, populus_peu12980, populus_peu12982
Solanaceae	Lycium barbarum	8	gene-LOC132601219, gene-LOC132601221, gene-LOC132603028 ... gene-LOC132603035, gene-LOC132603036, gene-LOC132603039, gene-LOC132603041, gene-LOC132603044
Solanaceae	Solanum chilense	3	SOLCI001427900, SOLCI007292800, SOLCI007292900
Solanaceae	Solanum pennellii	3	gene-LOC107024565, gene-LOC107024651, gene-LOC107024706
Tamaricaceae	Reaumuria soongarica	3	STRG.12312_chr02_+, gene_8138, gene_9033
Tamaricaceae	Tamarix chinensis	3	TC10G1110, TC10G1111, TC10G1112
Zosteraceae	Zostera marina	2	Zosma01g04200.v3.1, Zosma04g01580.v3.1