Basic Information
Locus ID:
nbis-gene-4475
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
WDR3
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00003.1 | 5443553 | 5450509 | - | nbis-gene-4475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 74,187.06 Da | 45.00 | 82.48 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 57 | 232 | 3.65279E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 191 | 7.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 149 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 79 | 107 | 0.0069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 232 | 2.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 405 | 2.14E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 458 | 1.1E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 22 | 235 | 1.3E-50 | IPR015943 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 233 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 358 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 406 | 0.47 | IPR001680 |
| SMART | SM00320 | WD40_4 | 61 | 107 | 0.046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 149 | 3.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 20 | 58 | 91.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 201 | 235 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 194 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 117 | 150 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 242 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 200 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 117 | 150 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 72 | 116 | 10.207686 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 94 | 108 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 136 | 150 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 178 | 192 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 178 | 192 | 6.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 94 | 108 | 6.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 136 | 150 | 6.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 673 | - | - |
| Coils | Coil | Coil | 521 | 548 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21540.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_034575681.1 | WD repeat-containing protein 3 [Setaria viridis] | 0 |
| Q54S79 | WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr3 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9WK83 | Utp12 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_07990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3518 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1104, gene_20182 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030622 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27200, Sbi_jg33331 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8035 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005714 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71296, Sgl74891 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008406, gene:ENSEOMG00000038751 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0018460, CQ.Regalona.r1.7BG0021050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30273730 |
| Apiaceae | Apium graveolens | 1 | Ag10G01989 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695733 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.990.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33505 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024329m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g020710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1562 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1614, Cgl02G1630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0249s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1549 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005009, Pov_00025481 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24696 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4884, CH01.5486 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234020, gene-QOZ80_3BG0293970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0411240.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070696, gene-QYE76_070719 |
| Poaceae | Oryza coarctata | 2 | Oco05G003130, Oco06G003140 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g05720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G478200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100050, Pt_Chr0100071 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G037100, Chr12G002370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G524700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG055020, gene_TRIDC4BG053610 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G370000.1, TraesCS4B02G317800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb004160_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4475 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4408 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1659, evm.TU.LG11.1012 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g08170, gene.Posoc08g08180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.918 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4286 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.907 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005094 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12605 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5818 |
| Salicaceae | Populus euphratica | 1 | populus_peu11629 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132629973, gene-LOC132630654 |
| Solanaceae | Solanum chilense | 1 | SOLCI003887000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002644 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5583 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1968 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33080.v3.1 |