Basic Information
Locus ID:
nbis-gene-44358
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00087.1 | 1057519 | 1063183 | + | nbis-gene-44358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 49,191.43 Da | 47.80 | 91.44 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 3.1E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 109 | 1.9E-17 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 51 | 3.66E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 84 | 374 | 1.88E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 156 | 437 | 2.4E-81 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 155 | 3.0E-33 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 4.7E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 227 | 251 | 38.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 101 | 125 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 170 | 193 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 336 | 360 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 126 | 151 | 18.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_004979343.1 | transport inhibitor response 1-like protein Os11g0515500 [Setaria italica] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9INN3 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology