Basic Information
Locus ID:
nbis-gene-44238
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00087.1 | 304668 | 306719 | - | nbis-gene-44238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 71,350.42 Da | 45.84 | 90.50 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 205 | 249 | 2.40076E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 209 | 250 | 3.9E-7 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 412 | 658 | 2.6E-30 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 359 | 658 | 5.77E-53 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 205 | 250 | 1.7E-5 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 193 | 263 | 2.6E-9 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 450 | 665 | 1.7E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 364 | 448 | 4.0E-11 | - |
| SMART | SM00257 | LysM_2 | 206 | 250 | 0.0011 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 205 | 249 | 10.701938 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 327 | 659 | 28.287094 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 278 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_025827048.1 | lysM domain receptor-like kinase 4 [Panicum hallii] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7CPF6 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G205100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology