Basic Information
Locus ID:
nbis-gene-44185
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00086.1 | 1231598 | 1236520 | - | nbis-gene-44185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 31,268.60 Da | 42.66 | 74.45 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.38051E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.7E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 240 | 276 | 5.0E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 151 | 188 | 2.2E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 144 | 190 | 2.45E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 5.76E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 225 | 282 | 2.25E-14 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 9.6E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 232 | 280 | 8.5E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 146 | 194 | 6.3E-18 | - |
| SMART | SM00165 | uba_6 | 150 | 190 | 1.0E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.4E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 241 | 278 | 1.2E-8 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.172449 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 149 | 191 | 12.33002 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 238 | 279 | 14.691536 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 235 | 251 | 3.6E-18 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 252 | 266 | 3.6E-18 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 267 | 282 | 3.6E-18 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 103 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025798871.1 | ubiquitin receptor RAD23b-like [Panicum hallii] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7F2S3 | Ubiquitin receptor RAD23 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G059100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology