Basic Information
Locus ID:
nbis-gene-44101
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00086.1 | 879613 | 881655 | - | nbis-gene-44101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 54,032.56 Da | 39.51 | 88.69 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 194 | 238 | 1.69532E-5 | IPR018392 |
| Pfam | PF01476 | LysM domain | 201 | 239 | 1.5E-5 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 194 | 239 | 4.19E-5 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 182 | 247 | 3.3E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 408 | 505 | 1.0E-6 | - |
| SMART | SM00257 | LysM_2 | 195 | 239 | 0.014 | IPR018392 |
| SMART | SM00257 | LysM_2 | 127 | 175 | 2.5 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 194 | 238 | 9.797905 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 265 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_039788555.1 | protein LYK5-like [Panicum virgatum] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology