Basic Information
Locus ID:
nbis-gene-44057
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00086.1 | 681093 | 685206 | + | nbis-gene-44057 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 76,179.34 Da | 62.31 | 93.78 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 570 | 592 | 2.0 | IPR001611 |
| Pfam | PF00646 | F-box domain | 256 | 295 | 2.5E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 412 | 435 | 0.0015 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 245 | 291 | 7.72E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 372 | 597 | 1.22E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 341 | 599 | 5.4E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 613 | 713 | 8.8E-8 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 464 | 489 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 386 | 411 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 357 | 385 | 280.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 412 | 437 | 2.1E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 438 | 463 | 0.22 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 681 | 706 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 650 | 680 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 544 | 569 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 596 | 621 | 730.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 570 | 595 | 0.0075 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_025798413.1 | EIN3-binding F-box protein 2-like [Panicum hallii] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6RNC1 | EIN3-binding F-box protein 1-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G20390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology