Basic Information
Locus ID:
nbis-gene-43159
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00080.1 | 686161 | 690244 | - | nbis-gene-43159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 37,560.63 Da | 44.48 | 68.60 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 188 | 262 | 1.78506E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 36 | 100 | 1.7E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 190 | 256 | 1.1E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 97 | 149 | 6.31E-18 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 180 | 267 | 5.78E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 23 | 100 | 7.93E-18 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 164 | 266 | 2.6E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 99 | 162 | 5.2E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 12 | 98 | 4.0E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 189 | 258 | 2.0E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 35 | 143 | 7.8E-28 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 188 | 262 | 16.790073 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 147 | 17.131182 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015617424.1 | oligouridylate-binding protein 1B [Oryza sativa Japonica Group] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology