Basic Information
Locus ID:
nbis-gene-43123
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00080.1 | 502021 | 510925 | + | nbis-gene-43123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 14,127.17 Da | 38.61 | 81.37 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 31 | 70 | 1.26588E-14 | - |
| Pfam | PF12906 | RING-variant domain | 31 | 64 | 1.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 69 | 2.61E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 85 | 9.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 30 | 71 | 9.8E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 23 | 82 | 16.087555 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_004979655.1 | uncharacterized protein LOC101768225 [Setaria italica] | 0 |
| TrEMBL | A0A5J9UMD8 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_26841 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology