Basic Information
Locus ID:
nbis-gene-43062
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00080.1 | 138185 | 138532 | + | nbis-gene-43062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 11,520.91 Da | 42.62 | 74.55 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 59 | 98 | 8.2E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 104 | 5.74E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 104 | 3.8E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 59 | 97 | 3.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 59 | 98 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034569954.1 | E3 ubiquitin-protein ligase RING1-like [Setaria viridis] | 0 |
| Q5BIY5 | RING finger protein 145 OS=Xenopus laevis OX=8355 GN=rnf145 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9SUL4 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51818 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16598, jg16599, jg35766 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30236250, pistato.v30239070 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000600 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697316, gene-LOC120108756 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.982 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1750, BH04.1754, CH04.2001 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684210, gene-QOZ80_9BG0710320 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066435 |
| Poaceae | Oryza coarctata | 2 | Oco21G007690, Oco22G008890 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g37230.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G176800, gene-BS78_05G177000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103171 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G005430, Chr17G004780 |
| Poaceae | Zea mays | 1 | Zm00001eb200510_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43061, nbis-gene-43062 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18120, Zma_g18121 |