Basic Information
Locus ID:
nbis-gene-42675
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00078.1 | 539020 | 540250 | - | nbis-gene-42675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 18,075.78 Da | 42.98 | 60.70 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 105 | 160 | 1.4E-5 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 161 | 1.01E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 164 | 1.9E-8 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034600573.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Setaria viridis] | 0 |
| TrEMBL | A0A5J9T0R0 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology