Basic Information
Locus ID:
nbis-gene-42497
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00077.1 | 1071818 | 1073839 | - | nbis-gene-42497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 29,667.08 Da | 48.04 | 48.64 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 65 | 119 | 9.943426 | IPR003656 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 156 | 175 | 10.82838 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 203 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039806370.1 | uncharacterized protein LOC120670356 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9T6P7 | BED-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_46970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30097510 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020250 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC120105161, gene-LOC120109954, gene-LOC120113094 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2755.V1.1 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7165 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.447 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023024, Pov_00030288 |
| Poaceae | Echinochloa crus-galli | 1 | AH05.2752 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3BG0277010, gene-QOZ80_6BG0492250 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005984 |
| Poaceae | Oryza coarctata | 5 | Oco11G007750, Oco14G011110, Oco14G011120, Oco17G004480 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G246600, gene-BS78_03G287300 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101783 |
| Poaceae | Sporobolus alterniflorus | 19 | Chr02G016270, Chr02G021370, Chr03G010360, Chr03G013250 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G645900 |
| Poaceae | Zea mays | 8 | Zm00001eb174270_P001, Zm00001eb224390_P001 ... |
| Poaceae | Zoysia japonica | 61 | nbis-gene-11057, nbis-gene-13451, nbis-gene-14315 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g17923, Zma_g20858, Zma_g20992, Zma_g26613 |
| Salicaceae | Populus euphratica | 1 | populus_peu09235 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26116_chr11_+ |